HL_9YDE_044

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9YDE|1|A|U|2298

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_044 not in the Motif Atlas

Homologous match to HL_8GLP_054

Geometric discrepancy: 0.0536

The information below is about HL_8GLP_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9YDE|1|A|U|2292
9YDE|1|A|C|2293
9YDE|1|A|U|2294
9YDE|1|A|A|2295
9YDE|1|A|A|2296
9YDE|1|A|U|2297
9YDE|1|A|U|2298
9YDE|1|A|A|2299
9YDE|1|A|G|2300

Current chains

Chain A

25S RNA

Nearby chains

Chain E

Small subunit ribosomal RNA; SSU rRNA

Chain LX

60S ribosomal protein L23-A