HL_9YDE_049

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

9YDE|1|A|A|2678, 9YDE|1|A|A|2679

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_049 not in the Motif Atlas

Homologous match to HL_9SUM_049

Geometric discrepancy: 0.1748

The information below is about HL_9SUM_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.4

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9YDE|1|A|A|2673
9YDE|1|A|A|2674
9YDE|1|A|C|2675
9YDE|1|A|A|2676
9YDE|1|A|G|2677
9YDE|1|A|A|2678
9YDE|1|A|A|2679
9YDE|1|A|A|2680
9YDE|1|A|U|2681

Current chains

Chain A

25S RNA

Nearby chains

Chain LM

Large ribosomal subunit protein uL5B