HL_9YDE_055

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9YDE|1|A|G|2898

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_055 not in the Motif Atlas

Homologous match to HL_9SUM_055

Geometric discrepancy: 0.0989

The information below is about HL_9SUM_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9YDE|1|A|A|2897
9YDE|1|A|G|2898
9YDE|1|A|C|2899
9YDE|1|A|A|2900
9YDE|1|A|G|2901
9YDE|1|A|A|2902
9YDE|1|A|A|2903
9YDE|1|A|U|2904

Current chains

Chain A

25S RNA

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain Lo

Ubiquitin-60S ribosomal protein L40