HL_9YDE_061

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

9YDE|1|A|U|3195

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_061 not in the Motif Atlas

Geometric match to HL_9H3G_008

Geometric discrepancy: 0.1679

The information below is about HL_9H3G_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.7

Basepair signature

cWW-F

Number of instances in this motif group

43

Unit IDs

9YDE|1|A|C|3194
9YDE|1|A|U|3195
9YDE|1|A|U|3196
9YDE|1|A|G|3197

Current chains

Chain A

25S RNA

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain LO

60S ribosomal protein L14-A