HL_9YDE_067
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGUGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDE_067 not in the Motif Atlas
- Homologous match to HL_8QYX_073
- Geometric discrepancy: 0.0786
- The information below is about HL_8QYX_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 456
Unit IDs
9YDE|1|B|G|88
9YDE|1|B|G|89
9YDE|1|B|U|90
9YDE|1|B|G|91
9YDE|1|B|A|92
9YDE|1|B|C|93
Current chains
- Chain B
- 5S RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LU
- 60S ribosomal protein L20-A
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