HL_9YDE_071

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

9YDE|1|C|U|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_071 not in the Motif Atlas

Homologous match to HL_9PN5_076

Geometric discrepancy: 0.1886

The information below is about HL_9PN5_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_18050.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9YDE|1|C|G|124
9YDE|1|C|U|125
9YDE|1|C|A|126
9YDE|1|C|U|127
9YDE|1|C|U|128
9YDE|1|C|C|129

Current chains

Chain C

8S RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain LZ

60S ribosomal protein L25