HL_9YDE_072
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDE_072 not in the Motif Atlas
- Homologous match to HL_9PN5_077
- Geometric discrepancy: 0.0697
- The information below is about HL_9PN5_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.4
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9YDE|1|E|G|7
9YDE|1|E|U|8
9YDE|1|E|U|9
9YDE|1|E|G|10
9YDE|1|E|A|11
9YDE|1|E|U|12
9YDE|1|E|C|13
9YDE|1|E|C|14
9YDE|1|E|U|15
9YDE|1|E|G|16
9YDE|1|E|C|17
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SR
- 40S ribosomal protein S2
- Chain Sc
- 40S ribosomal protein S23-A
Coloring options: