HL_9YPG_012
3D structure
- PDB id
- 9YPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPG_012 not in the Motif Atlas
- Homologous match to HL_9PN5_003
- Geometric discrepancy: 0.0524
- The information below is about HL_9PN5_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76371.5
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9YPG|1|5|C|89
9YPG|1|5|G|90
9YPG|1|5|G|91
9YPG|1|5|C|92
9YPG|1|5|G|93
9YPG|1|5|A|94
9YPG|1|5|G|95
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 11
- Transfer RNA; tRNA
- Chain L
- 60S ribosomal protein L13
- Chain Q
- Ribosomal protein L18
- Chain a
- 60S ribosomal protein L27a
- Chain o
- Large ribosomal subunit protein eL42
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