HL_9YPG_074
3D structure
- PDB id
- 9YPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPG_074 not in the Motif Atlas
- Homologous match to HL_9PN5_063
- Geometric discrepancy: 0.0598
- The information below is about HL_9PN5_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 456
Unit IDs
9YPG|1|5|C|4603
9YPG|1|5|G|4604
9YPG|1|5|A|4605
9YPG|1|5|G|4606
9YPG|1|5|A|4607
9YPG|1|5|G|4608
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 12
- Transfer RNA; tRNA
- Chain H
- 60S ribosomal protein L9
- Chain jj
- GTP-binding protein 1
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
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