HL_9YPG_076

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9YPG|1|5|G|4694, 9YPG|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|C|4688
9YPG|1|5|U|4689
9YPG|1|5|G|4690
9YPG|1|5|A|4691
9YPG|1|5|A|4692
9YPG|1|5|C|4693
9YPG|1|5|G|4694
9YPG|1|5|C|4695
9YPG|1|5|C|4696
9YPG|1|5|U|4697
9YPG|1|5|C|4698
9YPG|1|5|U|4699
9YPG|1|5|A|4700
9YPG|1|5|A|4701
9YPG|1|5|G|4702

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

Large ribosomal subunit protein uL13

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein