HL_9YPG_103

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPG_103 not in the Motif Atlas

Homologous match to HL_9H3G_094

Geometric discrepancy: 0.0483

The information below is about HL_9H3G_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YPG|1|9|C|994
9YPG|1|9|G|995
9YPG|1|9|A|996
9YPG|1|9|A|997
9YPG|1|9|A|998
9YPG|1|9|G|999

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain NN

Ribosomal protein S13

Chain aa

40S ribosomal protein S26