HL_9YPG_106

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPG_106 not in the Motif Atlas

Homologous match to HL_9H3G_097

Geometric discrepancy: 0.074

The information below is about HL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YPG|1|9|G|1141
9YPG|1|9|G|1142
9YPG|1|9|A|1143
9YPG|1|9|A|1144
9YPG|1|9|A|1145
9YPG|1|9|C|1146

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

Small ribosomal subunit protein uS5

Chain WW

Ribosomal protein S15a

Chain aa

40S ribosomal protein S26