HL_9YPO_008
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPO_008 not in the Motif Atlas
- Homologous match to HL_5J8B_109
- Geometric discrepancy: 0.0838
- The information below is about HL_5J8B_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9YPO|1|13|G|31
9YPO|1|13|C|32
9YPO|1|13|C|33
9YPO|1|13|C|34
9YPO|1|13|A|35
9YPO|1|13|U|36
9YPO|1|13|A|37
9YPO|1|13|A|38
9YPO|1|13|C|39
Current chains
- Chain 13
- Met-tRNA
Nearby chains
- Chain 10
- MF mRNA
- Chain 11
- Transfer RNA; tRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain PP
- uS19
- Chain QQ
- uS9
Coloring options: