HL_9YPO_028

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUCCAGUCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|C|1436
9YPO|1|5|C|1437
9YPO|1|5|U|1438
9YPO|1|5|U|1440
9YPO|1|5|C|1441
9YPO|1|5|C|1442
9YPO|1|5|A|1443
9YPO|1|5|G|1444
9YPO|1|5|U|1445
9YPO|1|5|C|1446
9YPO|1|5|C|1447
9YPO|1|5|G|1448

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain K

60S ribosomal protein L7

Chain Q

Ribosomal protein L18

Chain b

Large ribosomal subunit protein eL29