HL_9YPO_039

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|U|2006
9YPO|1|5|G|2007
9YPO|1|5|U|2008
9YPO|1|5|A|2009
9YPO|1|5|A|2010
9YPO|1|5|C|2011
9YPO|1|5|A|2012
9YPO|1|5|A|2013

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 12

Transfer RNA; tRNA

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein