HL_9YPO_040

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG

Length

40 nucleotides

Bulged bases

9YPO|1|5|C|2094, 9YPO|1|5|C|2260, 9YPO|1|5|C|2266, 9YPO|1|5|U|2267, 9YPO|1|5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|C|2087
9YPO|1|5|A|2088
9YPO|1|5|G|2089
9YPO|1|5|U|2090
9YPO|1|5|C|2091
9YPO|1|5|G|2092
9YPO|1|5|G|2093
9YPO|1|5|C|2094
9YPO|1|5|A|2095
9YPO|1|5|G|2096
9YPO|1|5|A|2097
9YPO|1|5|G|2098
9YPO|1|5|C|2099
9YPO|1|5|G|2100
9YPO|1|5|A|2101
9YPO|1|5|G|2102
9YPO|1|5|A|2103
9YPO|1|5|A|2104
9YPO|1|5|A|2105
9YPO|1|5|G|2106
9YPO|1|5|A|2107
9YPO|1|5|G|2108
9YPO|1|5|A|2109
9YPO|1|5|G|2110
9YPO|1|5|U|2111
9YPO|1|5|G|2112
9YPO|1|5|G|2113
9YPO|1|5|C|2258
9YPO|1|5|G|2259
9YPO|1|5|C|2260
9YPO|1|5|G|2261
9YPO|1|5|G|2262
9YPO|1|5|A|2263
9YPO|1|5|C|2264
9YPO|1|5|G|2265
9YPO|1|5|C|2266
9YPO|1|5|U|2267
9YPO|1|5|A|2268
9YPO|1|5|C|2269
9YPO|1|5|G|2270

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain K

60S ribosomal protein L7

Chain Q

Ribosomal protein L18

Chain b

Large ribosomal subunit protein eL29

Chain r

eL28