HL_9YPO_042

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPO_042 not in the Motif Atlas

Homologous match to HL_8GLP_033

Geometric discrepancy: 0.0724

The information below is about HL_8GLP_033

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9YPO|1|5|A|2376
9YPO|1|5|C|2377
9YPO|1|5|G|2378
9YPO|1|5|A|2379
9YPO|1|5|G|2380
9YPO|1|5|A|2381
9YPO|1|5|A|2382
9YPO|1|5|C|2383
9YPO|1|5|U|2384

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL22

Chain R

Ribosomal protein L19

Chain d

eL31