HL_9YPO_110

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9YPO|1|9|U|1300, 9YPO|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|A|1295
9YPO|1|9|U|1296
9YPO|1|9|U|1297
9YPO|1|9|G|1298
9YPO|1|9|A|1299
9YPO|1|9|U|1300
9YPO|1|9|A|1301
9YPO|1|9|G|1302
9YPO|1|9|C|1303
9YPO|1|9|U|1304

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain dd

eS29

Chain ff

Ribosomal protein S27a