HL_9YPS_018
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 9YPS|1|5|G|315, 9YPS|1|5|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPS_018 not in the Motif Atlas
- Homologous match to HL_8GLP_009
- Geometric discrepancy: 0.0616
- The information below is about HL_8GLP_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9YPS|1|5|G|314
9YPS|1|5|G|315
9YPS|1|5|U|316
9YPS|1|5|A|317
9YPS|1|5|A|318
9YPS|1|5|A|319
9YPS|1|5|C|320
9YPS|1|5|U|321
9YPS|1|5|C|322
9YPS|1|5|C|323
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain i
- 60S ribosomal protein L36
- Chain o
- Large ribosomal subunit protein eL42
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