HL_9YPS_039

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG

Length

40 nucleotides

Bulged bases

9YPS|1|5|C|2094, 9YPS|1|5|C|2260, 9YPS|1|5|C|2266, 9YPS|1|5|U|2267, 9YPS|1|5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|5|C|2087
9YPS|1|5|A|2088
9YPS|1|5|G|2089
9YPS|1|5|U|2090
9YPS|1|5|C|2091
9YPS|1|5|G|2092
9YPS|1|5|G|2093
9YPS|1|5|C|2094
9YPS|1|5|A|2095
9YPS|1|5|G|2096
9YPS|1|5|A|2097
9YPS|1|5|G|2098
9YPS|1|5|C|2099
9YPS|1|5|G|2100
9YPS|1|5|A|2101
9YPS|1|5|G|2102
9YPS|1|5|A|2103
9YPS|1|5|A|2104
9YPS|1|5|A|2105
9YPS|1|5|G|2106
9YPS|1|5|A|2107
9YPS|1|5|G|2108
9YPS|1|5|A|2109
9YPS|1|5|G|2110
9YPS|1|5|U|2111
9YPS|1|5|G|2112
9YPS|1|5|G|2113
9YPS|1|5|C|2258
9YPS|1|5|G|2259
9YPS|1|5|C|2260
9YPS|1|5|G|2261
9YPS|1|5|G|2262
9YPS|1|5|A|2263
9YPS|1|5|C|2264
9YPS|1|5|G|2265
9YPS|1|5|C|2266
9YPS|1|5|U|2267
9YPS|1|5|A|2268
9YPS|1|5|C|2269
9YPS|1|5|G|2270

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain K

60S ribosomal protein L7

Chain Q

Ribosomal protein L18

Chain b

Large ribosomal subunit protein eL29

Chain r

eL28