HL_9YPS_071
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 9YPS|1|5|G|4475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPS_071 not in the Motif Atlas
- Homologous match to HL_9H3G_063
- Geometric discrepancy: 0.0773
- The information below is about HL_9H3G_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02262.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 38
Unit IDs
9YPS|1|5|A|4474
9YPS|1|5|G|4475
9YPS|1|5|C|4476
9YPS|1|5|A|4477
9YPS|1|5|G|4478
9YPS|1|5|A|4479
9YPS|1|5|A|4480
9YPS|1|5|U|4481
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
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