HL_9YPS_098

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|9|A|569
9YPS|1|9|C|570
9YPS|1|9|U|571
9YPS|1|9|U|572
9YPS|1|9|U|573
9YPS|1|9|A|574
9YPS|1|9|A|575
9YPS|1|9|A|576
9YPS|1|9|U|577
9YPS|1|9|C|578
9YPS|1|9|C|579
9YPS|1|9|U|580
9YPS|1|9|U|581

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

40S ribosomal protein S24