HL_9YPT_005
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUGAACAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPT_005 not in the Motif Atlas
- Homologous match to HL_6GSK_203
- Geometric discrepancy: 0.1441
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9YPT|1|12|A|31
9YPT|1|12|C|32
9YPT|1|12|U|33
9YPT|1|12|G|34
9YPT|1|12|A|35
9YPT|1|12|A|36
9YPT|1|12|C|37
9YPT|1|12|A|38
9YPT|1|12|U|39
Current chains
- Chain 12
- Phe-tRNA
Nearby chains
- Chain 10
- MF mRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain PP
- uS19
- Chain XX
- uS12
- Chain ee
- 40S ribosomal protein S30
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