HL_9YPT_039

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG

Length

40 nucleotides

Bulged bases

9YPT|1|5|C|2094, 9YPT|1|5|C|2260, 9YPT|1|5|C|2266, 9YPT|1|5|U|2267, 9YPT|1|5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|C|2087
9YPT|1|5|A|2088
9YPT|1|5|G|2089
9YPT|1|5|U|2090
9YPT|1|5|C|2091
9YPT|1|5|G|2092
9YPT|1|5|G|2093
9YPT|1|5|C|2094
9YPT|1|5|A|2095
9YPT|1|5|G|2096
9YPT|1|5|A|2097
9YPT|1|5|G|2098
9YPT|1|5|C|2099
9YPT|1|5|G|2100
9YPT|1|5|A|2101
9YPT|1|5|G|2102
9YPT|1|5|A|2103
9YPT|1|5|A|2104
9YPT|1|5|A|2105
9YPT|1|5|G|2106
9YPT|1|5|A|2107
9YPT|1|5|G|2108
9YPT|1|5|A|2109
9YPT|1|5|G|2110
9YPT|1|5|U|2111
9YPT|1|5|G|2112
9YPT|1|5|G|2113
9YPT|1|5|C|2258
9YPT|1|5|G|2259
9YPT|1|5|C|2260
9YPT|1|5|G|2261
9YPT|1|5|G|2262
9YPT|1|5|A|2263
9YPT|1|5|C|2264
9YPT|1|5|G|2265
9YPT|1|5|C|2266
9YPT|1|5|U|2267
9YPT|1|5|A|2268
9YPT|1|5|C|2269
9YPT|1|5|G|2270

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain K

60S ribosomal protein L7

Chain Q

Ribosomal protein L18

Chain b

Large ribosomal subunit protein eL29

Chain r

eL28