HL_9YPT_045

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9YPT|1|5|U|2530, 9YPT|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|G|2523
9YPT|1|5|U|2524
9YPT|1|5|U|2525
9YPT|1|5|C|2526
9YPT|1|5|A|2527
9YPT|1|5|G|2528
9YPT|1|5|A|2529
9YPT|1|5|U|2530
9YPT|1|5|C|2531
9YPT|1|5|C|2532

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein L19

Chain X

eL23

Chain g

Large ribosomal subunit protein eL34