HL_9YPT_064
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9YPT|1|5|A|4214, 9YPT|1|5|C|4221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPT_064 not in the Motif Atlas
- Homologous match to HL_8GLP_060
- Geometric discrepancy: 0.0472
- The information below is about HL_8GLP_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.4
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9YPT|1|5|U|4210
9YPT|1|5|C|4211
9YPT|1|5|A|4212
9YPT|1|5|A|4213
9YPT|1|5|A|4214
9YPT|1|5|C|4215
9YPT|1|5|G|4216
9YPT|1|5|G|4217
9YPT|1|5|U|4218
9YPT|1|5|A|4219
9YPT|1|5|A|4220
9YPT|1|5|C|4221
9YPT|1|5|G|4222
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain T
- eL21
- Chain b
- Large ribosomal subunit protein eL29
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