HL_9YPT_070
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPT_070 not in the Motif Atlas
- Homologous match to HL_9H3G_062
- Geometric discrepancy: 0.1072
- The information below is about HL_9H3G_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.4
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9YPT|1|5|C|4417
9YPT|1|5|G|4418
9YPT|1|5|U|4419
9YPT|1|5|U|4420
9YPT|1|5|C|4421
9YPT|1|5|A|4422
9YPT|1|5|U|4423
9YPT|1|5|A|4424
9YPT|1|5|G|4425
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 12
- Transfer RNA; tRNA
- Chain I
- 60S ribosomal protein L10
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
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