HL_9YPT_099

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPT_099 not in the Motif Atlas

Homologous match to HL_9H3G_090

Geometric discrepancy: 0.0964

The information below is about HL_9H3G_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YPT|1|9|C|618
9YPT|1|9|A|619
9YPT|1|9|G|620
9YPT|1|9|C|621
9YPT|1|9|C|622
9YPT|1|9|G|623

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 10

MF mRNA

Chain XX

uS12