HL_9YPT_101

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|9|U|885
9YPT|1|9|A|886
9YPT|1|9|U|887
9YPT|1|9|U|888
9YPT|1|9|U|889
9YPT|1|9|U|890
9YPT|1|9|G|891
9YPT|1|9|U|892
9YPT|1|9|U|893
9YPT|1|9|G|894
9YPT|1|9|G|895
9YPT|1|9|U|896
9YPT|1|9|U|897
9YPT|1|9|U|898
9YPT|1|9|U|899
9YPT|1|9|C|900
9YPT|1|9|G|901

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain LL

Ribosomal protein S11