HL_9YPV_006

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPV_006 not in the Motif Atlas

Homologous match to HL_5WT1_003

Geometric discrepancy: 0.1122

The information below is about HL_5WT1_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9YPV|1|12|G|53
9YPV|1|12|U|54
9YPV|1|12|U|55
9YPV|1|12|C|56
9YPV|1|12|G|57
9YPV|1|12|A|58
9YPV|1|12|U|59
9YPV|1|12|C|60
9YPV|1|12|C|61

Current chains

Chain 12

Phe-tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain jj

GTP-binding protein 1