HL_9YPV_013

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9YPV|1|5|G|134, 9YPV|1|5|G|135, 9YPV|1|5|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPV_013 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.152

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9YPV|1|5|C|131
9YPV|1|5|G|132
9YPV|1|5|C|133
9YPV|1|5|G|134
9YPV|1|5|G|135
9YPV|1|5|C|136
9YPV|1|5|G|137

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain N

Ribosomal protein L15

Chain h

eL35

Chain j

Ribosomal protein L37