HL_9YPV_018

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9YPV|1|5|G|315, 9YPV|1|5|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|G|314
9YPV|1|5|G|315
9YPV|1|5|U|316
9YPV|1|5|A|317
9YPV|1|5|A|318
9YPV|1|5|A|319
9YPV|1|5|C|320
9YPV|1|5|U|321
9YPV|1|5|C|322
9YPV|1|5|C|323

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein L15

Chain a

60S ribosomal protein L27a

Chain i

60S ribosomal protein L36

Chain o

Large ribosomal subunit protein eL42