HL_9YPV_020

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPV_020 not in the Motif Atlas

Homologous match to HL_8GLP_118

Geometric discrepancy: 0.069

The information below is about HL_8GLP_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9YPV|1|5|U|393
9YPV|1|5|G|394
9YPV|1|5|A|395
9YPV|1|5|A|396
9YPV|1|5|G|397
9YPV|1|5|A|398

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL22