HL_9YPV_046
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 9YPV|1|5|U|2530, 9YPV|1|5|C|2531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPV_046 not in the Motif Atlas
- Homologous match to HL_9PN5_034
- Geometric discrepancy: 0.0818
- The information below is about HL_9PN5_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77449.4
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
9YPV|1|5|G|2523
9YPV|1|5|U|2524
9YPV|1|5|U|2525
9YPV|1|5|C|2526
9YPV|1|5|A|2527
9YPV|1|5|G|2528
9YPV|1|5|A|2529
9YPV|1|5|U|2530
9YPV|1|5|C|2531
9YPV|1|5|C|2532
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain X
- eL23
- Chain g
- Large ribosomal subunit protein eL34
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