HL_9YPV_061
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 9YPV|1|5|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPV_061 not in the Motif Atlas
- Homologous match to HL_9H3G_052
- Geometric discrepancy: 0.0966
- The information below is about HL_9H3G_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.3
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9YPV|1|5|G|3757
9YPV|1|5|U|3758
9YPV|1|5|A|3759
9YPV|1|5|A|3760
9YPV|1|5|C|3761
9YPV|1|5|U|3762
9YPV|1|5|A|3763
9YPV|1|5|U|3764
9YPV|1|5|G|3765
9YPV|1|5|A|3766
9YPV|1|5|C|3767
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 10
- MF mRNA
- Chain 12
- Transfer RNA; tRNA
- Chain 13
- Transfer RNA; tRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
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