HL_9YPV_077
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9YPV|1|5|G|4694, 9YPV|1|5|C|4698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPV|1|5|C|4688
9YPV|1|5|U|4689
9YPV|1|5|G|4690
9YPV|1|5|A|4691
9YPV|1|5|A|4692
9YPV|1|5|C|4693
9YPV|1|5|G|4694
9YPV|1|5|C|4695
9YPV|1|5|C|4696
9YPV|1|5|U|4697
9YPV|1|5|C|4698
9YPV|1|5|U|4699
9YPV|1|5|A|4700
9YPV|1|5|A|4701
9YPV|1|5|G|4702
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain O
- Large ribosomal subunit protein uL13
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
Coloring options: