HL_9YPV_080
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAGACGAC
- Length
- 9 nucleotides
- Bulged bases
- 9YPV|1|5|U|4976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPV_080 not in the Motif Atlas
- Homologous match to HL_8GLP_075
- Geometric discrepancy: 0.0527
- The information below is about HL_8GLP_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37889.4
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9YPV|1|5|G|4975
9YPV|1|5|U|4976
9YPV|1|5|A|4977
9YPV|1|5|G|4978
9YPV|1|5|A|4979
9YPV|1|5|C|4980
9YPV|1|5|G|4981
9YPV|1|5|A|4982
9YPV|1|5|C|4983
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain P
- Large ribosomal subunit protein uL22
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