HL_9YPV_097

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9YPV|1|9|A|500, 9YPV|1|9|C|502, 9YPV|1|9|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPV_097 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.1856

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9YPV|1|9|C|498
9YPV|1|9|G|499
9YPV|1|9|A|500
9YPV|1|9|C|501
9YPV|1|9|C|502
9YPV|1|9|C|503
9YPV|1|9|G|504

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain YY

40S ribosomal protein S24