HL_9YPV_101

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9YPV|1|9|G|821, 9YPV|1|9|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|9|U|820
9YPV|1|9|G|821
9YPV|1|9|U|822
9YPV|1|9|U|823
9YPV|1|9|C|824
9YPV|1|9|A|825
9YPV|1|9|A|826
9YPV|1|9|A|827
9YPV|1|9|G|828

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

40S ribosomal protein S24