HL_9YPV_102

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

9YPV|1|9|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|9|U|885
9YPV|1|9|A|886
9YPV|1|9|U|887
9YPV|1|9|U|888
9YPV|1|9|U|889
9YPV|1|9|U|890
9YPV|1|9|G|891
9YPV|1|9|U|892
9YPV|1|9|U|893
9YPV|1|9|G|894
9YPV|1|9|G|895
9YPV|1|9|U|896
9YPV|1|9|U|897
9YPV|1|9|U|898
9YPV|1|9|U|899
9YPV|1|9|C|900
9YPV|1|9|G|901

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain LL

Ribosomal protein S11