HL_9YPW_017

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

9YPW|1|5|G|294, 9YPW|1|5|A|295, 9YPW|1|5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|5|C|289
9YPW|1|5|U|290
9YPW|1|5|U|291
9YPW|1|5|G|292
9YPW|1|5|G|293
9YPW|1|5|G|294
9YPW|1|5|A|295
9YPW|1|5|A|296
9YPW|1|5|U|297
9YPW|1|5|G|298

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain a

60S ribosomal protein L27a

Chain o

Large ribosomal subunit protein eL42