HL_9YPW_035

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

9YPW|1|5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPW_035 not in the Motif Atlas

Homologous match to HL_8GLP_028

Geometric discrepancy: 0.0631

The information below is about HL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YPW|1|5|G|1864
9YPW|1|5|G|1865
9YPW|1|5|U|1866
9YPW|1|5|A|1867
9YPW|1|5|A|1868
9YPW|1|5|G|1869
9YPW|1|5|C|1870

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10