HL_9YPW_039
3D structure
- PDB id
- 9YPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 9YPW|1|5|C|2094, 9YPW|1|5|C|2260, 9YPW|1|5|C|2266, 9YPW|1|5|U|2267, 9YPW|1|5|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPW|1|5|C|2087
9YPW|1|5|A|2088
9YPW|1|5|G|2089
9YPW|1|5|U|2090
9YPW|1|5|C|2091
9YPW|1|5|G|2092
9YPW|1|5|G|2093
9YPW|1|5|C|2094
9YPW|1|5|A|2095
9YPW|1|5|G|2096
9YPW|1|5|A|2097
9YPW|1|5|G|2098
9YPW|1|5|C|2099
9YPW|1|5|G|2100
9YPW|1|5|A|2101
9YPW|1|5|G|2102
9YPW|1|5|A|2103
9YPW|1|5|A|2104
9YPW|1|5|A|2105
9YPW|1|5|G|2106
9YPW|1|5|A|2107
9YPW|1|5|G|2108
9YPW|1|5|A|2109
9YPW|1|5|G|2110
9YPW|1|5|U|2111
9YPW|1|5|G|2112
9YPW|1|5|G|2113
9YPW|1|5|C|2258
9YPW|1|5|G|2259
9YPW|1|5|C|2260
9YPW|1|5|G|2261
9YPW|1|5|G|2262
9YPW|1|5|A|2263
9YPW|1|5|C|2264
9YPW|1|5|G|2265
9YPW|1|5|C|2266
9YPW|1|5|U|2267
9YPW|1|5|A|2268
9YPW|1|5|C|2269
9YPW|1|5|G|2270
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain K
- 60S ribosomal protein L7
- Chain Q
- Ribosomal protein L18
- Chain b
- Large ribosomal subunit protein eL29
- Chain r
- eL28
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