HL_9YPW_102

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|9|A|957
9YPW|1|9|G|958
9YPW|1|9|G|959
9YPW|1|9|U|960
9YPW|1|9|G|961
9YPW|1|9|A|962
9YPW|1|9|A|963
9YPW|1|9|A|964
9YPW|1|9|U|965
9YPW|1|9|U|966

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 10

MF mRNA

Chain 11

Transfer RNA; tRNA

Chain OO

Small ribosomal subunit protein uS11

Chain aa

40S ribosomal protein S26