HL_9YPY_007

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

9YPY|1|13|G|18, 9YPY|1|13|G|19, 9YPY|1|13|A|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPY_007 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.1388

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|13|C|14
9YPY|1|13|A|15
9YPY|1|13|G|16
9YPY|1|13|C|17
9YPY|1|13|G|18
9YPY|1|13|G|19
9YPY|1|13|A|20
9YPY|1|13|A|21
9YPY|1|13|G|22

Current chains

Chain 13

Met-tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain J

Ribosomal protein L11

Chain o

Large ribosomal subunit protein eL42