HL_9YPZ_042
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 9YPZ|1|5|U|2530, 9YPZ|1|5|C|2531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPZ_042 not in the Motif Atlas
- Homologous match to HL_8GLP_038
- Geometric discrepancy: 0.0888
- The information below is about HL_8GLP_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77449.4
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
9YPZ|1|5|G|2523
9YPZ|1|5|U|2524
9YPZ|1|5|U|2525
9YPZ|1|5|C|2526
9YPZ|1|5|A|2527
9YPZ|1|5|G|2528
9YPZ|1|5|A|2529
9YPZ|1|5|U|2530
9YPZ|1|5|C|2531
9YPZ|1|5|C|2532
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain X
- eL23
- Chain g
- Large ribosomal subunit protein eL34
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