HL_9YPZ_054
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9YPZ|1|5|A|3642, 9YPZ|1|5|A|3643, 9YPZ|1|5|U|3644, 9YPZ|1|5|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPZ_054 not in the Motif Atlas
- Homologous match to HL_9H3G_049
- Geometric discrepancy: 0.0663
- The information below is about HL_9H3G_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.3
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 10
Unit IDs
9YPZ|1|5|U|3639
9YPZ|1|5|U|3640
9YPZ|1|5|U|3641
9YPZ|1|5|A|3642
9YPZ|1|5|A|3643
9YPZ|1|5|U|3644
9YPZ|1|5|U|3645
9YPZ|1|5|A|3646
9YPZ|1|5|A|3647
9YPZ|1|5|A|3648
9YPZ|1|5|A|3649
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain j
- Ribosomal protein L37
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