HL_9YPZ_062

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|G|4250
9YPZ|1|5|A|4251
9YPZ|1|5|C|4252
9YPZ|1|5|A|4253
9YPZ|1|5|G|4254
9YPZ|1|5|A|4255
9YPZ|1|5|A|4256
9YPZ|1|5|A|4257
9YPZ|1|5|C|4258

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein L11