HL_9YQ0_011

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9YQ0|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ0_011 not in the Motif Atlas

Homologous match to HL_8GLP_005

Geometric discrepancy: 0.0671

The information below is about HL_8GLP_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9YQ0|1|5|U|204
9YQ0|1|5|C|205
9YQ0|1|5|U|206
9YQ0|1|5|G|207
9YQ0|1|5|A|208
9YQ0|1|5|U|209
9YQ0|1|5|C|210
9YQ0|1|5|G|211

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Y

uL24

Chain e

Ribosomal protein L32