HL_9YQ0_023

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ0_023 not in the Motif Atlas

Homologous match to HL_8GLP_018

Geometric discrepancy: 0.0696

The information below is about HL_8GLP_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9YQ0|1|5|U|1389
9YQ0|1|5|G|1390
9YQ0|1|5|A|1391
9YQ0|1|5|A|1392
9YQ0|1|5|G|1393
9YQ0|1|5|G|1394

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain Q

Ribosomal protein L18

Chain a

60S ribosomal protein L27a

Chain i

60S ribosomal protein L36